PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000197534
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 277aa    MW: 32017.4 Da    PI: 8.2211
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000197534genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.3e-15154260198
                    EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS CS
             B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr 87 
                    f+k+lt+sdv    +r+ + k+ +e+h       g++ ++++ +t +d +g+ + + ++ + ++  +vlt+GWk+Fv+++gL    Dfv++ + ++
  MDP0000197534 154 FEKQLTSSDVRDGqCRFAINKEDVENHiflllkkGEDIRKGIHVTTYDVDGNDYPMVYKLWAGK-IHVLTGGWKNFVHDHGLVeKQDFVTLWVFRN 248
                    99********9877******************997777899*****************999997.689**************8688***9998888 PP

                    .SEE..EEEEE- CS
             B3  88 .sefelvvkvfr 98 
                     ++++l++ + +
  MDP0000197534 249 aDNGSLCFVISS 260
                    788888887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023628.8E-12154261IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-17154256IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-16154258No hitNo description
Gene3DG3DSA:2.40.330.109.9E-17154258IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.1E-4154262IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNPKRNTRLG ESSRQDMDDR DHEEDPDCKD KSMTMKEGAL ILIHMKHKVL DSDSARELEN  60
MKCKFLGSNY WKKKYSHEGT TRKRIIQETE APKTLEAVYN VAAAQGQQPL TGELQKLKDE  120
EVEAEGLFYG NYAPPDVPHV PRIQHLIQVC SKPFEKQLTS SDVRDGQCRF AINKEDVENH  180
IFLLLKKGED IRKGIHVTTY DVDGNDYPMV YKLWAGKIHV LTGGWKNFVH DHGLVEKQDF  240
VTLWVFRNAD NGSLCFVISS RRLPVYETIK KRRLRSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024171463.19e-77uncharacterized protein LOC112177403
TrEMBLA0A498KC810.0A0A498KC81_MALDO; Uncharacterized protein
STRINGXP_008390609.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-26B3 family protein