PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000198037
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 359aa    MW: 40216.5 Da    PI: 5.0603
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000198037genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.4e-102843241055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r+RR+riN+++ +L+ l+P+      +K++ +++Le+Av+Y++ Lq
  MDP0000198037 284 RKRRERINERLRTLQHLVPNG-----TKVDISTMLEEAVHYVNFLQ 324
                    9******************97.....8*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-13273338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.862274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11279332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-11280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-11283328No hitNo description
PfamPF000102.6E-7284324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEAVGVFADG EWEXLSRLFS SEEVEFTPHF LXQGNSFPFQ HNEGMGFETL ETFYPNIPGV  60
ETFSHLPSSD SPNSNVYLSS QESCNYGNNN HGNFTAMLNQ ENCYFRNSCN FLVSNIDVSE  120
SMDVYMNHDE KSFASFVPDF SNIVMHGSEC XKEDSSSDSQ PAVVSVPEKE LRLKRVHDAP  180
GKSNNDASNC NPKKKPHISK DAEKSKKNNV RPKKGQKGNS NVKVKDEEER LESTSSCTSE  240
DDNGSLEXNG AETSDPKSSS ALNLNGKTRA NRGSATDPQS LYARKRRERI NERLRTLQHL  300
VPNGTKVDIS TMLEEAVHYV NFLQLQIKLL GSDDMWMYAP IVYNGIDIGL DLQKLFPLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393743.20.0transcription factor bHLH85-like
TrEMBLA0A498HTP70.0A0A498HTP7_MALDO; Uncharacterized protein
STRINGXP_008393740.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-47bHLH family protein