PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000198514
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 245aa    MW: 27129.3 Da    PI: 9.4998
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000198514genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.1e-09188232345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  ++ lv+a k ++++   +W+++a+ ++ g++  qck ++ 
    MDP0000198514 188 VWSAVQEKALVQALKTFPKEaaqRWERVAAAVP-GKSVVQCKKKFA 232
                      7********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.48251106IPR017877Myb-like domain
SMARTSM007170.003455108IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-657100IPR009057Homeodomain-like
CDDcd001670.002085898No hitNo description
PROSITE profilePS512939.62184239IPR017884SANT domain
SMARTSM007171.4E-7185237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-5186242IPR009057Homeodomain-like
SuperFamilySSF466894.93E-9187242IPR009057Homeodomain-like
PfamPF002491.9E-7188231IPR001005SANT/Myb domain
CDDcd001671.16E-6189235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEGKEGLERA EVLRDACGYK DDLVGKKEEE KKAEQQNGSV KSNGTVQLAS YEKKEEKPWX  60
REEIELLRKG MVKFPKGTSR RWEVVSDYIG TGRSVEEILK ATKTVLLQKP DSSKAFDSFL  120
EKRKPSPSIA SPLTTRVEVE GVPTTQATET PAVKTDEAGE SXSVSAKDQT PTYPIVENGL  180
LSGSEQDVWS AVQEKALVQA LKTFPKEAAQ RWERVAAAVP GKSVVQCKKK FALLKESFRN  240
KKSTA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.227271e-174bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028965697.11e-169dnaJ homolog subfamily C member 2-like
TrEMBLA0A498IXF11e-168A0A498IXF1_MALDO; Uncharacterized protein
STRINGXP_008348963.11e-169(Malus domestica)
STRINGXP_008382765.11e-174(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.12e-73DnaJ domain ;Myb-like DNA-binding domain