PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000199437

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 417aa MW: 45883.6 Da PI: 9.5437

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000199437	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.8	5.9e-14	177	221	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky MDP0000199437 177 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 221 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.703	170	226	IPR017930	Myb domain
SuperFamily	SSF46689	2.09E-16	172	226	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-16	173	224	IPR006447	Myb domain, plants
SMART	SM00717	2.4E-10	174	224	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-11	176	220	IPR009057	Homeodomain-like
Pfam	PF00249	3.6E-11	177	221	IPR001005	SANT/Myb domain
CDD	cd00167	4.24E-9	177	221	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MEGITCAPAN EVGTVSFAFV RKEGNQAAHS EAFIKKIEIN LSPHRPLRSH HFYFALFFFS 60 KSYGLRSIVA EETETDRPET SSSRSVKMSS GTCSSVEPAG AGEIMLFGVR LVVDSMRKSV 120 SLNNLSQYEQ PQEAASNNGN NGTAAGKDDA APGYASENXV VHNSGGNRER ERKRGVPWTE 180 EEHKLFLLGL QKVGKGDWRG ISRNFVKTRT PTQVASHAQK YYLRRSNLNR RRRRSSLFDI 240 TTDTFKIRIA FDSSTKLFST FFDIFSPPPK EKVAPTPMDE EQVQHQDNIS QSQLHPLPPP 300 PPSEXRNAGG FSMVPNFART VGPAVLPVHI ENPMGNLALR QANPENSTSX KLVHPVALHS 360 APHATAISDL NLNSTTDTST LTLNLSLSMD SREPSSRHSA FQTMPGFSNG DSMISVA

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MEGITCAPAN EVGTVSFAFV RKEGNQAAHS EAFIKKIEIN LSPHRPLRSH HFYFALFFFS  60
KSYGLRSIVA EETETDRPET SSSRSVKMSS GTCSSVEPAG AGEIMLFGVR LVVDSMRKSV  120
SLNNLSQYEQ PQEAASNNGN NGTAAGKDDA APGYASENXV VHNSGGNRER ERKRGVPWTE  180
EEHKLFLLGL QKVGKGDWRG ISRNFVKTRT PTQVASHAQK YYLRRSNLNR RRRRSSLFDI  240
TTDTFKIRIA FDSSTKLFST FFDIFSPPPK EKVAPTPMDE EQVQHQDNIS QSQLHPLPPP  300
PPSEXRNAGG FSMVPNFART VGPAVLPVHI ENPMGNLALR QANPENSTSX KLVHPVALHS  360
APHATAISDL NLNSTTDTST LTLNLSLSMD SREPSSRHSA FQTMPGFSNG DSMISVA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11980	0.0	bud\| cell culture\| fruit\| leaf\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY196776	0.0	AY196776.1 Malus xiaojinensis transcription factor Myb1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315795.1	0.0	transcription factor MYB1R1-like
Swissprot	Q2V9B0	3e-63	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A498HWU5	0.0	A0A498HWU5_MALDO; Uncharacterized protein
STRING	XP_008360819.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	8e-51	MYB_related family protein

Link Out ? help Back to Top
Phytozome	MDP0000199437

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]