PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000199840

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 304aa MW: 34628.6 Da PI: 7.0021

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000199840	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.9	3.1e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd++v s MDP0000199840 6 LPPGFRFHPTDEELVAYYLDRKINGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVSS 100 79**************************.99**********96435566888*********************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLv+y+grap+g +t+Wvmheyrl MDP0000199840 101 -QRRAVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 .8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-64	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.701	6	157	IPR003441	NAC domain
Pfam	PF02365	4.1E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVSS QRRAVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLVDSVCAN ASSSLKDSYA LCRVFKKTIQ MPKNNKEEKP IGINNADKDS 180 IWVSNEQLFG EENSGINEGA SRGIETDQDE NYSTHGYPKF PSDTSSSDLT QGTPTENGIA 240 DDLQATFASD EANSSADLYS FGVHCSSDLV QVCTKYHVQF HFFGTIHLRA HDRKWYSGIS 300 WVIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-61	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-61	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-61	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-61	1	157	12	165	NO APICAL MERISTEM PROTEIN
4dul_A	9e-61	1	157	12	165	NAC domain-containing protein 19
4dul_B	9e-61	1	157	12	165	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008371963.1	0.0	NAC domain-containing protein 86-like
Swissprot	Q9FFI5	1e-90	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A498JYR8	0.0	A0A498JYR8_MALDO; Uncharacterized protein
STRING	XP_008371963.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10508	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	6e-97	NAC domain containing protein 20

Link Out ? help Back to Top
Phytozome	MDP0000199840

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]