PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000199939
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 529aa    MW: 59702.9 Da    PI: 7.1142
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000199939genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-14237283148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W++eEd  lv++v ++G + W+ Ia+ +  gR +kqc++rw+++l
    MDP0000199939 237 KGQWSPEEDRHLVQLVGRFGIKKWSHIANQLT-GRVGKQCRERWHNHL 283
                      799****************************9.*************97 PP
2Myb_DNA-binding50.74.2e-16291331345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W++eEd++l++a+k++G++ W+  a+ ++ gRt++ +k++w+
    MDP0000199939 291 MWSEEEDKILIEAHKKMGNR-WAEMAKILP-GRTENTIKNHWN 331
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.245232287IPR017930Myb domain
SuperFamilySSF466891.26E-30234330IPR009057Homeodomain-like
SMARTSM007175.7E-12236285IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-24238288IPR009057Homeodomain-like
CDDcd001676.57E-12240283No hitNo description
PfamPF139215.0E-15240295No hitNo description
PROSITE profilePS5129418.281288338IPR017930Myb domain
SMARTSM007171.3E-14288336IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-21289336IPR009057Homeodomain-like
CDDcd001672.80E-13292334No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEYLETNLRE LDNFPLISTL LYGSSNPLKL MKPENPPPTT IKTTTXDGNL YSLSRSSPSP  60
PSSPKALFHH PNSINHGFNR ISHSHEYNLT PKTDHFTTTE AGSSSNPFSK ISTTCNTLNN  120
PFEXSPYTPN YHRHHFVTSD CGEXELVAMH GFHGGVRGCL GYPPDHQEIP HDQQMGAESC  180
VQLPPLVIYG EFGSSSAPAM RLHSDDIPRL SADEKKNKRL CEGGAIKLLH KKPDIIKGQW  240
SPEEDRHLVQ LVGRFGIKKW SHIANQLTGR VGKQCRERWH NHLRPDIRKE MWSEEEDKIL  300
IEAHKKMGNR WAEMAKILPG RTENTIKNHW NATKRKQNSK RKSNKQDSSN NNYNESSMLQ  360
DYIRTVVNST XTGTPSTASA NSTGTMENKA VLSSVVSPDH QSGMHINQNX IVESPDATNS  420
ANWDLTGYRP EPFDSEASNM NNHMGDGVTT LSDXDKSNMF NIFESYGLGG YLQQRMASSS  480
TSRVKDPSCS MEYELXFFPL EMNNFMQGHD DHVKKELDIM EMLHFKGNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-452333393110B-MYB
1h88_C5e-4523333754158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-4523333754158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341722.20.0transcription factor MYB98-like
TrEMBLA0A498HJZ20.0A0A498HJZ2_MALDO; Uncharacterized protein
STRINGXP_008341722.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1709548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-53myb domain protein 98