PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000200376
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 505aa    MW: 56832.6 Da    PI: 6.2083
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000200376genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-14108186286
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                    +kv++ps v+   +l l  kf +eh+ k  ++ +++lede+gr++e k+ ++k++    l++GW++F  a+++  gD v+F+l+ 
  MDP0000200376 108 LKVMMPSQVSGGFCLNLATKFRREHMPK--QDSMIVLEDENGREFETKYLVEKGG----LSGGWRGFSIAHKIMKGDAVIFHLVT 186
                    69***********************744..6669***************666666....9**********************864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1599189IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-17100191IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-18105191No hitNo description
PROSITE profilePS5086310.08107208IPR003340B3 DNA binding domain
SMARTSM010191.2E-10107199IPR003340B3 DNA binding domain
PfamPF023621.0E-11108186IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MAEAMVILQD QKQSSTNPLL LLPPPPPPHK GMATEKPFGQ KPPCLQLKTT SNVLNAKTNP  60
IMLECRKRKT PVRVTVESLY ESSQAQSSVM DRAKKIEASL DPRFPSLLKV MMPSQVSGGF  120
CLNLATKFRR EHMPKQDSMI VLEDENGREF ETKYLVEKGG LSGGWRGFSI AHKIMKGDAV  180
IFHLVTPFKF KTIDFSDAIM IVTMMKSFIP RFKETGSRNL VGFPLNGNFE KKRQDLHYCF  240
EMLLLNAYEI LNSFAIYLLQ VFIVRSNEVD CNFPLMRVNP PIKQMDTGGV TARGKEREIL  300
EPIPQENAIV CYTDSGPISD QSENDCVDVG SEFLDGLRLS ESVVTFKEVN CLENFNVQVN  360
GLIINSEFSK YVLTKYYELC GSQNSFLHGQ LLEGLNCKLI AGVISETVNI ADAIRACKIT  420
TPEDYLSTWD KTLKAFDDLG MNVRFLSARL DQLASLASKS KRPKEVNVLE VKEAMDSHLD  480
SEIETPNRSP EELEIMFQEV AKAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028965463.11e-177B3 domain-containing protein Os01g0234100-like
TrEMBLA0A498J2M11e-174A0A498J2M1_MALDO; Uncharacterized protein
STRINGXP_009344646.11e-167(Pyrus x bretschneideri)
STRINGXP_009344647.11e-167(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-31B3 family protein