PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000200379
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 236aa    MW: 26490.2 Da    PI: 8.3866
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000200379genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.45e-38511511100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    aCaaCk++r+kCa+dC+lap+fpa++p++f+n+h+l+G+sn+  +lk++ ++++++da++s+vye+++ra+ Pv G++g+i++l+ ql+++ +el 
  MDP0000200379  51 ACAACKHQRKKCAQDCPLAPHFPASKPQTFRNAHRLYGVSNIKTILKQIhDPQQKTDAVQSIVYESDMRAKFPVTGCLGIINQLNFQLQEAMKELY 146
                    7************************************************66777****************************************99 PP

         DUF260  96 llkee 100
                    +++++
  MDP0000200379 147 HVRTH 151
                    88775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.02850152IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-3651148IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MKPAPYSITS AAAVPITLYL CIVLIPASVF GRTFFGFPTM PAKGGGSAGQ ACAACKHQRK  60
KCAQDCPLAP HFPASKPQTF RNAHRLYGVS NIKTILKQIH DPQQKTDAVQ SIVYESDMRA  120
KFPVTGCLGI INQLNFQLQE AMKELYHVRT HLAVCKDQLL QDHTNRRIED NLHFQDDDPD  180
YRNLVNPAAL RPVQVQQPYN FVPPAQAFSN RAEQETDAPA APNYQCYHYL DSNDRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-25381523111LOB family transfactor Ramosa2.1
5ly0_B4e-25381523111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375592.11e-177protein ASYMMETRIC LEAVES 2-like
RefseqXP_028960658.11e-177protein ASYMMETRIC LEAVES 2-like
TrEMBLA0A498JBD21e-176A0A498JBD2_MALDO; Uncharacterized protein
STRINGXP_008375592.11e-177(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44152958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-25LOB domain-containing protein 27