PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000200748
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 164aa    MW: 18307.1 Da    PI: 9.554
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000200748genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.98.6e-2895153259
                    --SS-EEEEEEE--TT-SS-EEEEEE.-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrC.tsagCpvkkkversaedpkvveitYegeHnhe 59 
                     D+y+WrKYGqK++kgs++pr+YYrC t +gCp++k+v+r+ +dp ++++tY  eH+h 
  MDP0000200748  95 TDEYSWRKYGQKPIKGSPYPRGYYRCiTVKGCPARKQVDRAPNDPMTLIVTYYWEHRHA 153
                    69************************5556****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-55892IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.5E-3083153IPR003657WRKY domain
PROSITE profilePS5081128.55289155IPR003657WRKY domain
SuperFamilySSF1182906.41E-2592153IPR003657WRKY domain
SMARTSM007743.0E-3194154IPR003657WRKY domain
PfamPF031062.1E-2496152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MFIRVIIDDI TKLLQSPTPI GMAFTDLQGI DSTELALSLM SSAMSPLSTL PGELPGTGSA  60
SGSGKYHCSN SNRRKKQVKT IRVPVIGSKI NDIPTDEYSW RKYGQKPIKG SPYPRGYYRC  120
ITVKGCPARK QVDRAPNDPM TLIVTYYWEH RHAPENMELV CETK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-1882152271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950524.17e-79WRKY transcription factor 1-like
SwissprotQ9SJA83e-40WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBLA0A498HMB11e-119A0A498HMB1_MALDO; Uncharacterized protein
STRINGXP_009367965.11e-70(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3812122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.13e-41WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  2. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]