PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000200822

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bZIP

Protein Properties

Length: 152aa MW: 17657.1 Da PI: 9.2867

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000200822	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.7	3e-14	64	118	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++ rr+ +NRe+ArrsR RKk +e L+ +v+ L+ eN++Lk++l +++ l MDP0000200822 64 RKRRRMTSNRESARRSRWRKKRHLEDLTSEVDRLKIENQELKNRLGLVAQKCHVL 118 5779999****************************************99999866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-12	57	118	No hit	No description
SMART	SM00338	6.7E-14	60	124	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.07	62	114	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.63E-12	64	119	No hit	No description
Pfam	PF00170	4.8E-12	64	119	IPR004827	Basic-leucine zipper domain
CDD	cd14702	6.41E-16	65	116	No hit	No description
PROSITE pattern	PS00036	0	67	82	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MMMSSSAMSF IHEPADMGRF ECPVQETVLT TAEIQELLSL LQAGNSASPS SEGSNREVDT 60 VDERKRRRMT SNRESARRSR WRKKRHLEDL TSEVDRLKIE NQELKNRLGL VAQKCHVLWR 120 ENDRMTSESL ALRARLSDLY RILIAMQTQY SQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	67	RKRRR
2	65	84	RRRMTSNRESARRSRWRKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008377948.2	1e-108	basic leucine zipper 4-like
Swissprot	Q9LQ65	5e-27	BZIP4_ARATH; Basic leucine zipper 4
TrEMBL	A0A498J9Z7	1e-107	A0A498J9Z7_MALDO; Uncharacterized protein
STRING	XP_008377948.1	1e-102	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5996	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59530.1	2e-29	basic leucine-zipper 4

Link Out ? help Back to Top
Phytozome	MDP0000200822

Publications ? help Back to Top
Guo YL, et al. Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiol., 2011. 157(2): p. 757-69 [PMID:21810963] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Ma H, et al. ZmbZIP4 Contributes to Stress Resistance in Maize by Regulating ABA Synthesis and Root Development. Plant Physiol., 2018. 178(2): p. 753-770 [PMID:30126870]