PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000201016
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 571aa    MW: 62353.5 Da    PI: 8.846
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000201016genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.51.1e-15105197186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  + +L+ea++e+ ++l+rg+l++ +Weev++ +        + +   ++ +qCk+k++nl+kryk + ++    +    s++ +f++le
  MDP0000201016 105 EWSDTAIGCLLEAYTEKFNQLNRGNLRGRDWEEVAEMLsercgtggANKSAYKTVEQCKNKIDNLKKRYKVELQRIXX-SGLGASHWHWFKKLE 197
                    5***********************************9999998888777788899***************98888776.4788889*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-19103197No hitNo description
Gene3DG3DSA:3.40.1160.107.8E-50245468IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.57E-38251469IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.93E-91254469No hitNo description
PfamPF006961.3E-12255445IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MASSDNFPMI DASSHLQAPT RPGDTIDSAA AANNGNFFPP PFPDDIDRSP NPTRNSNTKR  60
SSYYNKRFKS SSANPNPTTS TTEAESSSGP ETASQRGDYR KDREEWSDTA IGCLLEAYTE  120
KFNQLNRGNL RGRDWEEVAE MLSERCGTGG ANKSAYKTVE QCKNKIDNLK KRYKVELQRI  180
XXSGLGASHW HWFKKLEVIL GSXVAAKGGG GSDEERSVGR AGGNAAKQLK RYTPGSAAFG  240
NNLKAKSMPN LKWRRVMLKI SGAALAGDCQ SIDPKVAMQI AEEVARACHL GVEVAIVVGG  300
RNVFCGETWV SSTGLDRSTA YHIGMMATVM NSVILQSALE KVGLQARVQT SLTIPEVSEP  360
YNRLRAIRHL EKGRVVIFGG TGAGTGNYLF TTDTAAALRA SESRSLPWPR FNAEAVVKGT  420
NFNGIYDSHP GNSSANVDII CYREVVPNSN TSMDAMALTY CEENRIPAIP SGVLEVQCNL  480
IRNTGCPFDG PISMSEFLFL WFPLCLHRHV ISLRKLQSMS EKAMKQVRVY SKKTNGITNA  540
IACFQAVLDN HHIPMTCNAH RPCINDGXGC S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A9e-512474673214Uridylate kinase
3ek5_B9e-512474673214Uridylate kinase
3ek5_C9e-512474673214Uridylate kinase
3ek5_D9e-512474673214Uridylate kinase
3ek5_E9e-512474673214Uridylate kinase
3ek5_F9e-512474673214Uridylate kinase
3ek6_A9e-512474673214Uridylate kinase
3ek6_B9e-512474673214Uridylate kinase
3ek6_C9e-512474673214Uridylate kinase
3ek6_D9e-512474673214Uridylate kinase
3ek6_E9e-512474673214Uridylate kinase
3ek6_F9e-512474673214Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008345426.20.0uncharacterized protein LOC103408349 isoform X1
TrEMBLA0A498KGM90.0A0A498KGM9_MALDO; Uncharacterized protein
STRINGXP_008345426.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-140Trihelix family protein