PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000202143

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

HB-other

Protein Properties

Length: 416aa MW: 46579.5 Da PI: 5.3254

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000202143	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.1e-09	244	291	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k q+e+Le++++k++ p+ ++ + + ++L+ ++V WF +R MDP0000202143 244 RLKKAQVETLESVYRKTKRPTNAMVSSIVHVTNLPRKRVVKWFEDKRS 291 67899****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.058	236	296	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-9	242	294	IPR009057	Homeodomain-like
CDD	cd00086	1.67E-6	242	290	No hit	No description
SMART	SM00389	3.0E-4	242	300	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-8	243	292	IPR009057	Homeodomain-like
Pfam	PF00046	5.4E-7	244	291	IPR001356	Homeobox domain
Pfam	PF15697	5.3E-12	323	402	IPR031421	Protein of unknown function DUF4666

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MAFASALNTP KGLHFLPLPS SLRERPPTNL VLPRHFPTRF SSTLALARRR NHRAEVAPSK 60 TKIRKKILGK KEVKEAEVEV EEEDVNEDAI DALFRLLEED LKNDDASFDD EDLTEEELAK 120 LEQEVAEALG IDGDDDDVDD DDDDDEEEDD DDDDIKTLAA ELCLDRAVVL ELLREPPPSL 180 LMMCAALPDE PATVISVSQT KSVETVVETT RETVVETATD SVKLEPAVKV PVHVRQQKFS 240 AQKRLKKAQV ETLESVYRKT KRPTNAMVSS IVHVTNLPRK RVVKWFEDKR SEEGVPDSRI 300 GITTIPAQTK YHHKFTTVQE KAMATLARSA STFRRQGSSG LIWDDKLVLQ REGGRADSRE 360 LRPCQSAKPG GLEAYSHSNA SLAACPRSRS VPTKNPNSFK SKFLKMFHAL FRKSDA

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MAFASALNTP KGLHFLPLPS SLRERPPTNL VLPRHFPTRF SSTLALARRR NHRAEVAPSK  60
TKIRKKILGK KEVKEAEVEV EEEDVNEDAI DALFRLLEED LKNDDASFDD EDLTEEELAK  120
LEQEVAEALG IDGDDDDVDD DDDDDEEEDD DDDDIKTLAA ELCLDRAVVL ELLREPPPSL  180
LMMCAALPDE PATVISVSQT KSVETVVETT RETVVETATD SVKLEPAVKV PVHVRQQKFS  240
AQKRLKKAQV ETLESVYRKT KRPTNAMVSS IVHVTNLPRK RVVKWFEDKR SEEGVPDSRI  300
GITTIPAQTK YHHKFTTVQE KAMATLARSA STFRRQGSSG LIWDDKLVLQ REGGRADSRE  360
LRPCQSAKPG GLEAYSHSNA SLAACPRSRS VPTKNPNSFK SKFLKMFHAL FRKSDA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A498HQ70	1e-151	A0A498HQ70_MALDO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10181	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	1e-38	overexpressor of cationic peroxidase 3

Link Out ? help Back to Top
Phytozome	MDP0000202143