PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000203826

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 476aa MW: 54195.8 Da PI: 6.7463

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000203826	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	300.7	3.7e-92	90	471	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++ Ll A+av++++ a + L++l +++s gd++qR++ayf+ +Laarl+ s y+ + ++ts +ee+ a+++++ vsP+++f+h+ MDP0000203826 90 LIHMLLITATAVNENNVGSALEHLTELYKIVSLCGDSVQRVVAYFADGLAARLLTRKSPFYDMIMKEPTS----EEEFVAFTALYRVSPYYQFAHF 181 6899*************************************************9999988887775....78899999************ PP GRAS 97 taNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvak 184 taNqaI ea+e+e +++H+iDfd+s+G+QWp+L+q+L++ + ++ slRiTg+g+ s +el+et++rL++f + + ++ fef+ l MDP0000203826 182 TANQAIIEAFEKEqeknnRALHVIDFDVSYGFQWPSLIQSLSENAssSNRISLRITGFGR----SVDELRETENRLTSFSKGFrNLVFEFQGL--- 270 *******9977777788*****************998444555*****....9************9758***8... PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 l +l +Lr k++E++aVnlv+ql +l +++++++ +Lk v l+P +v++veqe + + sFl rf+e+l+y++a+fdsl+ lp es MDP0000203826 271 -LRGSKLINLRKKRNETIAVNLVFQLNTLS-NNLKISD----LLKSVHLLNPSIVILVEQEGSKSPRSFLSRFMESLHYFAAMFDSLDDCLPLESA 360 .66667789**************997.5566655....************************************************** PP GRAS 281 erikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveee............sgslv 359 er ++E+ lg+ei++++ +++ ++e++e+W+ ++e+ GF+ ++ls+k qa+lll+ ++ e++ +g + MDP0000203826 361 ERLSIEKNHLGKEIKSMLNYDNNNdeNCPKTEKMETWKTMMESQGFEGINLSSKSKIQARLLLKIRThysPLEFDGESSgaaagfkvferdDGRTI 456 **************8765541277799***************************9744311111122221133333333333455555 PP GRAS 360 .lgWkdrpLvsvSaW 373 lgW+dr L++vSaW MDP0000203826 457 sLGWQDRYLLTVSAW 471 6************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	48.128	64	436	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-89	90	471	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MEDIDEEEEF LNLSLAIVTS SGKERFKKRK RSRDDGIANS ILVSPLNSYE GCEGKIFRLL 60 QMREQMLKKL DLHKKKGVAL DGEDGRGLHL IHMLLITATA VNENNVGSAL EHLTELYKIV 120 SLCGDSVQRV VAYFADGLAA RLLTRKSPFY DMIMKEPTSE EEFVAFTALY RVSPYYQFAH 180 FTANQAIIEA FEKEQEKNNR ALHVIDFDVS YGFQWPSLIQ SLSENASSSN RISLRITGFG 240 RSVDELRETE NRLTSFSKGF RNLVFEFQGL LRGSKLINLR KKRNETIAVN LVFQLNTLSN 300 NLKISDLLKS VHLLNPSIVI LVEQEGSKSP RSFLSRFMES LHYFAAMFDS LDDCLPLESA 360 ERLSIEKNHL GKEIKSMLNY DNNNDENCPK TEKMETWKTM MESQGFEGIN LSSKSKIQAR 420 LLLKIRTHYS PLEFDGESSG AAAGFKVFER DDGRTISLGW QDRYLLTVSA WHCTVS

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MEDIDEEEEF LNLSLAIVTS SGKERFKKRK RSRDDGIANS ILVSPLNSYE GCEGKIFRLL  60
QMREQMLKKL DLHKKKGVAL DGEDGRGLHL IHMLLITATA VNENNVGSAL EHLTELYKIV  120
SLCGDSVQRV VAYFADGLAA RLLTRKSPFY DMIMKEPTSE EEFVAFTALY RVSPYYQFAH  180
FTANQAIIEA FEKEQEKNNR ALHVIDFDVS YGFQWPSLIQ SLSENASSSN RISLRITGFG  240
RSVDELRETE NRLTSFSKGF RNLVFEFQGL LRGSKLINLR KKRNETIAVN LVFQLNTLSN  300
NLKISDLLKS VHLLNPSIVI LVEQEGSKSP RSFLSRFMES LHYFAAMFDS LDDCLPLESA  360
ERLSIEKNHL GKEIKSMLNY DNNNDENCPK TEKMETWKTM MESQGFEGIN LSSKSKIQAR  420
LLLKIRTHYS PLEFDGESSG AAAGFKVFER DDGRTISLGW QDRYLLTVSA WHCTVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-54	98	471	27	378	Protein SCARECROW
5b3h_A	2e-54	98	471	26	377	Protein SCARECROW
5b3h_D	2e-54	98	471	26	377	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	31	KKRKRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008381008.2	0.0	scarecrow-like protein 23
TrEMBL	A0A498JYY7	0.0	A0A498JYY7_MALDO; Uncharacterized protein
STRING	XP_008381008.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6200	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	7e-56	GRAS family protein

Link Out ? help Back to Top
Phytozome	MDP0000203826