PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000204606
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 150aa    MW: 16692.8 Da    PI: 8.3396
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000204606genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY26.81e-08130149221
                    --SS-EEEEEEE--TT-SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefp 21 
                    +Dg++WrKYGqK++ g+++p
  MDP0000204606 130 EDGHSWRKYGQKDILGAKHP 149
                    8*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-7121149IPR003657WRKY domain
SuperFamilySSF1182902.35E-6128149IPR003657WRKY domain
PfamPF031064.5E-6130149IPR003657WRKY domain
PROSITE profilePS508118.524130150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDSGKSWEQK SLVNEIIEGM ELAKQLRLCL NAKSSADTKQ FLVQRILSSY EKALLMLKCG  60
GSPQSPIRAI ASAPESLMSA NEGPCCVDNN RSLQDHQDLT AVSKKRKEMA KWTEHVTRVI  120
SENGIEGPHE DGHSWRKYGQ KDILGAKHPX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.168301e-166cell culture
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959531.11e-107LOW QUALITY PROTEIN: probable WRKY transcription factor 53
TrEMBLA0A498JJJ91e-105A0A498JJJ9_MALDO; Uncharacterized protein
STRINGXP_008343700.11e-106(Malus domestica)
STRINGXP_008358143.11e-106(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-29WRKY family protein