PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000204959

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 186aa MW: 20968.2 Da PI: 7.0981

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000204959	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	101	121	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 y+Cp+C F ++nL H++ MDP0000204959 101 YTCPKCXCEFVFSENLDAHMS 121 9*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MRIVLVDSSN ASEVSQFCSY NTSSHNQLRD LINLNAIELR GNKEFARTPR SNLSELRSHK 60 VSHPMVNLXX AQQEKNVGSD LSLXARIRTR RXLNKSKYAL YTCPKCXCEF VFSENLDAHM 120 SMNSDCPMDH SQFTWYLEHL AGLKLEATSP NSNATASNED GEKEDMARKQ ATLLTSSAEN 180 QGQPFN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A498IRE6	1e-114	A0A498IRE6_MALDO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF38139	2	2

Link Out ? help Back to Top
Phytozome	MDP0000204959