PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000205113
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 587aa    MW: 64104.6 Da    PI: 7.0984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000205113genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09386433455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  MDP0000205113 386 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 433
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-17380451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.50E-10380437No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16382450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663382432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6386433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10388438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MENDFFLNAG IPPPLHLEQA SSIPAWRSSF STAMDIQAAA ADRNCXLXQS PDCFYNPNWD  60
NKSTDQNIHF ESALSSMVSS PAASNSNISN ESFVIRELIG KLGSIGNSGD LAPHSQSLLG  120
IQNSYMGRNG NASANTSCYS TPLNSPPKLN LPVPDHHLKK EKLPNLGNSM ALNSSLAEFS  180
ADPGFAERAA KFSCFGSRSF NGRTSQLGTN NNNSTEQPSF RFHPAAGNGG KLPRVSSSPS  240
IKALGSQTSM QEKMRALLQD RSELPNSREE STISEQNPNR ETNSMDLNSR XRKSASKGKA  300
KDHHPPPISP SPTSTKGAEV NENSXTKRSK PSENNGNDQN GSVKAEEDAX GSTSSDEKQT  360
KTGPKPPEPP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP GCNKVTGKAL  420
MLDEIINYVQ SLQRQVEFLS MKLSSVNTRL DFNMETLMSK EIFQQNHGLP QHPIFPSDSS  480
AQAIYGHXRQ QNPVLSNGAV DPLDNTSPCQ SLGMQLPPLS GFSSEGIPHV INFTVLLPQY  540
XKFIEGSFPA FGEDDLHTIV QMGFGQNPTR ESELLGSNQV SHMKIEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.300910.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008382580.20.0transcription factor bHLH62
TrEMBLA0A498IXG80.0A0A498IXG8_MALDO; Uncharacterized protein
STRINGXP_008382578.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-102bHLH family protein