PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000205358
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 744aa    MW: 80563.8 Da    PI: 6.9713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000205358genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.28.4e-15479534455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC.......TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkas....kapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P++          K++Ka++L +A+eY+k Lq
  MDP0000205358 479 VHNLSERRRRDRINEKMRALQELIPNCNkteiFIMTYKVDKASMLDEAIEYLKTLQ 534
                    6*************************87677755567******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.73E-17469538No hitNo description
Gene3DG3DSA:4.10.280.102.3E-19472542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-19472546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.917475533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-12479534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-17481539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MARLLIRNRT LITVIFQLLA MPFSELYRMA GRVDSSQDFE NDFLELVWEN GQVVMQGQSS  60
RTRKNPSCNT LPSYNTPKNR DRDVGNSNIG KTGKFGFVVD SELDEIPLSV PSSEMGLSED  120
DDXLPWLNYS IDEPLHHEYC HDFLPEFSSA TANEASSNHN LASIDKRSSS SQVLRXSNPN  180
SAHEDACLQQ RNVGKVAXXG RADVSRPRTG TSQLYSLSSQ QSQAXYPSFR SRVSDTAGDN  240
TSATHRDVGK NSNQISSTGG FPGMKMQRQD PVMPRNTNPS IMNFTHFSRP AALAKANVQN  300
NGAMAGSGSS SMERIENKDK FSAATRNNLP ESXLIDSSSG APKESNSQCQ PILVRSSDEL  360
KATKAKPLEE PCTAKRSEXA CQEETSKNDI NANDKPCESA SRVSPGXEKT LEPVVASSVC  420
SGNSVERGSD DPTHALKRKC RETDESECHS DDVEDESVGV KKGAHARGKG SKRSRAAEVH  480
NLSERRRRDR INEKMRALQE LIPNCNKTEI FIMTYKVDKA SMLDEAIEYL KTLQLQVQIM  540
SMGAGMYMPP MMLSPGMQHM HGPRMAHFSP MGVGMGMGMG MGLGMGFGMG MPDMNGASSS  600
YPMLQVPPMQ GAHFPGXHMA GHNAFNGMMG SNLQMFGLPS QGVPMQMQCA PLAPSSGGPL  660
VKSSAGPNAG SSGGPVENVE SAPVSGSKDL VQNMNSQVMQ NNNANSSINP TSSQGQATNE  720
GFGQTALVRN NVQAADANNN RANR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1483488ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.161040.0bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9878740.0JN987874.1 Malus x domestica phytochrome-interacting factor 3 (PIF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008370333.20.0transcription factor PIF3 isoform X1
TrEMBLA0A498K0I40.0A0A498K0I4_MALDO; Uncharacterized protein
STRINGXP_008370333.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-53phytochrome interacting factor 3