PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000205807
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 374aa    MW: 39899 Da    PI: 7.1319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000205807genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-10222269455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  MDP0000205807 222 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 269
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.46E-10216273No hitNo description
SuperFamilySSF474597.98E-18216288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828218268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-18218289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-8222269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MVAFMDGSSL NPAFTPPQAY STLSVGTSSF GFGFGYGYRV GSVRMNSVVD KMDPPLIHES  60
SFSAANPASY SLAEIWPISG EPGGSGGGLG LRMGNLGQSF GGLGDSSVNR DGSLEESTVT  120
EQSGGGCGGG GGGRGRKRRD VSSEDESSKQ VSTSSGNGLK YSGGKRMKLA GSSNENGSLK  180
AEVEESSAAG DKKPAEESTK PSEPPKQDFI HVRARRGQAT DSHSLAERAR REKISERMKI  240
LQDLVPGCNK VIGKALVLDE IINYIQSLQH QVEFLSMKLE AVNSRMNMNP AIEAFPPKDN  300
VNLRLGIFWV QXFNLGDASR NVNVCQQRSV XVLGAQPFDA AGLLFGSHTP REYAQSSQPE  360
WLHMQVGGSF ERAT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.127911e-166fruit| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894210.0KP689421.1 Prunus pseudocerasus isolate Unigene13496 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374503.31e-177transcription factor bHLH79-like isoform X2
RefseqXP_028959835.11e-177transcription factor bHLH79-like isoform X3
SwissprotQ9LV176e-83BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A498JMM10.0A0A498JMM1_MALDO; Uncharacterized protein
STRINGXP_008374503.11e-180(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]