PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000206212

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 281aa MW: 31632.8 Da PI: 6.5219

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000206212	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.4	9.1e-43	4	141	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF+Pt+eel+++yL+kk++g++ ++++i+ v iy+++Pw+Lp+ ++++ ++w+fF++r++++a+g r++r t++gyWkatg+ MDP0000206212 4 LPPGFRFSPTEEELISFYLQKKLDGRSedlnRVVDRIIPVVYIYEFNPWELPQaageXIHGDPEQWFFFIPRQESEARGGRPRRLTTTGYWKATGS 99 79**********************966533334479999******9646665666778**************************** PP NAM 89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127 +v+s+ + +++glk+t+vfy+grap+g kt+W m+ey+ MDP0000206212 100 PSTVYSSnsnHXRAIGLKRTMVFYTGRAPHGXKTEWKMNEYK 141 **96555566*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.23E-44	3	182	IPR003441	NAC domain
PROSITE profile	PS51005	47.846	4	182	IPR003441	NAC domain
Pfam	PF02365	2.0E-22	5	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MEDLPPGFRF SPTEEELISF YLQKKLDGRS EDLNRVVDRI IPVVYIYEFN PWELPQAAGE 60 XIHGDPEQWF FFIPRQESEA RGGRPRRLTT TGYWKATGSP STVYSSNSNH XRAIGLKRTM 120 VFYTGRAPHG XKTEWKMNEY KAIEIHADDN NQXSMAASSS NPSTPSTPTL RQEFSLCRVY 180 KKSKCLRAFD RRPPGIEITR NPNLNIQAAP AQTADHLDQG LTTSNRNPQN MEGRTNSSSP 240 ESSSSGGHGS QSSQPEQSGT LPMAVDNEAI WDLDQXINFL L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-34	4	182	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-34	4	182	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-34	4	182	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-34	4	182	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-34	4	182	20	168	NAC domain-containing protein 19
3swm_B	4e-34	4	182	20	168	NAC domain-containing protein 19
3swm_C	4e-34	4	182	20	168	NAC domain-containing protein 19
3swm_D	4e-34	4	182	20	168	NAC domain-containing protein 19
3swp_A	4e-34	4	182	20	168	NAC domain-containing protein 19
3swp_B	4e-34	4	182	20	168	NAC domain-containing protein 19
3swp_C	4e-34	4	182	20	168	NAC domain-containing protein 19
3swp_D	4e-34	4	182	20	168	NAC domain-containing protein 19
4dul_A	3e-34	4	182	17	165	NAC domain-containing protein 19
4dul_B	3e-34	4	182	17	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008387035.2	0.0	NAC domain-containing protein 90-like
TrEMBL	A0A498IJ17	0.0	A0A498IJ17_MALDO; Uncharacterized protein
STRING	XP_008387035.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-59	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	MDP0000206212