PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000206914
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 169aa    MW: 19493.2 Da    PI: 10.5561
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000206914genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.2e-18108161356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t++q++ L++ F  ++++  e++  L+k lgL+ rqV +WFqNrRa++k
  MDP0000206914 108 KKRRLTTDQVQFLKKSFDVENKMEPERKVMLTKDLGLQPRQVAIWFQNRRARWK 161
                    56689************************************************9 PP
2HD-ZIP_I/II93.52.2e-30108167261
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEk 61 
                    kkrrl+++qv++L +sF+ e+k+eperKv l+++Lglqprqva+WFqnrRAR+ktk+lEk
  MDP0000206914 108 KKRRLTTDQVQFLKKSFDVENKMEPERKVMLTKDLGLQPRQVAIWFQNRRARWKTKHLEK 167
                    9**********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-1798164IPR009057Homeodomain-like
PROSITE profilePS5007115.92103163IPR001356Homeobox domain
SMARTSM003893.8E-16105167IPR001356Homeobox domain
CDDcd000867.33E-14106164No hitNo description
PfamPF000461.2E-15108161IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-18110167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKEVRFPIFC ILVGVLTVNM AGGRVNDGRN SFVLSALLQN HRSSEPLDSL FLSRSSTSSS  60
AHFLGSRSMV SFEDVRGGRG SNKSLFHQYE HEDNREDDLG EYLHQPGKKR RLTTDQVQFL  120
KKSFDVENKM EPERKVMLTK DLGLQPRQVA IWFQNRRARW KTKHLEKGL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.25941e-163bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346529.13e-81homeobox-leucine zipper protein HAT5-like
RefseqXP_028947055.13e-80homeobox-leucine zipper protein HAT5-like
TrEMBLA0A498HX632e-79A0A498HX63_MALDO; Uncharacterized protein
TrEMBLA0A498KPY62e-79A0A498KPY6_MALDO; Uncharacterized protein
STRINGXP_008356479.11e-106(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-28homeobox 1