PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000207866

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

HB-other

Protein Properties

Length: 252aa MW: 28819.9 Da PI: 7.324

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000207866	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.5	1.3e-19	19	74	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ ql +Le+++++++yp++e++ +LA++l+L+e+q++ WF+ rR k+k+ MDP0000207866 19 KKRKLKTPAQLMALEKFYNEHKYPTEEMKSQLAEQLRLSEKQISGWFCHRRLKDKR 74 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-21	2	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.151	15	75	IPR001356	Homeobox domain
SMART	SM00389	6.1E-19	17	79	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.11E-18	17	82	IPR009057	Homeodomain-like
CDD	cd00086	2.95E-17	19	74	No hit	No description
Pfam	PF00046	4.2E-17	19	74	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MESNELHSEE NKNSQDNNKK RKLKTPAQLM ALEKFYNEHK YPTEEMKSQL AEQLRLSEKQ 60 ISGWFCHRRL KDKRLSRDET QANGRQDRSS VVIQDRASGL GQDSCGSTKH GEHRFVDPRE 120 VESRRLSGHD FTSADITREY RSHYTERVGD MDNTSSESSS SLQDRLLTRK EDPYDVETSR 180 YLTHTKGMEN MGYKPSGFMK VKGEAENAAI TAVKRQLGRQ YWEDGPLLGV EFDLLPRGAF 240 ESPIIGSGHG TS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.5887	0.0	cell culture\| leaf\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028944617.1	0.0	uncharacterized protein LOC103430831 isoform X1
TrEMBL	A0A251PSY1	1e-150	A0A251PSY1_PRUPE; Uncharacterized protein
STRING	XP_008375850.1	0.0	(Malus domestica)
STRING	XP_008391024.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	6e-82	HB-other family protein

Link Out ? help Back to Top
Phytozome	MDP0000207866