PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000207872

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 213aa MW: 24291.8 Da PI: 4.2547

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000207872	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.8	5.1e-13	23	63	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W +E+ ll+++++++G g+W+ +++++g ++t+ +c++++ MDP0000207872 23 WNVDEEMLLLEGIEMYGFGNWTEVSEHVG-TKTRQHCIDHYK 63 9**************************.********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.83E-12	18	69	IPR009057	Homeodomain-like
PROSITE profile	PS51293	20.164	18	70	IPR017884	SANT domain
SMART	SM00717	9.0E-10	19	68	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-12	22	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-8	23	65	IPR009057	Homeodomain-like
CDD	cd00167	5.17E-11	23	63	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MGDDESDETR QDNLAFPLIC PDWNVDEEML LLEGIEMYGF GNWTEVSEHV GTKTRQHCID 60 HYKAIYMNSP FFPLPDMSHV MGKSREELLA LAKGSDEIKK EVPMLVEITL KEVSPFSAEV 120 KCEESKNNPA SQSSSNSTAE TQVDRSVGEK KLRSLGEEGP ITEFSGYNFK REEFETEYDN 180 DAEQILADME FKDTDTNADR ELKLRVLHVY AKX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6cw2_C	4e-16	15	78	57	120	Transcriptional adapter 2
6cw3_E	3e-16	15	78	57	120	Transcriptional adapter 2
6cw3_G	3e-16	15	78	57	120	Transcriptional adapter 2
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Functional Description ? help Back to Top
Source	Description
UniProt	Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008365226.2	1e-138	LOW QUALITY PROTEIN: transcriptional adapter ADA2a-like
Swissprot	Q75LL6	1e-75	TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBL	A0A498HEY2	1e-138	A0A498HEY2_MALDO; Transcriptional adapter
STRING	XP_008365226.1	1e-139	(Malus domestica)

Link Out ? help Back to Top
Phytozome	MDP0000207872

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]