PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000209483

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 229aa MW: 26071.2 Da PI: 4.7624

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000209483	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.7	2.1e-08	106	153	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +++ r RR++i ++ + L +l+P K++ ae+L+ A +Y+k+Lq MDP0000209483 106 KSQSIAARERRRKITEKTQALGKLVPGG-----SKMNTAEMLTAAYNYVKYLQ 153 6678899*****************95.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-12	101	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-12	102	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.236	103	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.79E-10	103	156	No hit	No description
Pfam	PF00010	3.8E-6	106	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-9	109	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MALSPLPPQA FDSEMTITNC FQQNLEAELL TADFLQYYYY SEYNINSNFS NSFVDEYHSW 60 YDPYDLLNLE NHDHDTTTDD XLLLPHNSFS LTAPDFNPYP NPKRQKSQSI AARERRRKIT 120 EKTQALGKLV PGGSKMNTAE MLTAAYNYVK YLQAQVGXLQ LMGSFKELKE APPIEELQVV 180 ASPVLQEKLY LENNCLVPKK FVAILAXXFD AQSKPSLSNN LNXLLTSTT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028959367.1	1e-123	transcription factor bHLH117-like
TrEMBL	A0A498JUG2	1e-64	A0A498JUG2_MALDO; Uncharacterized protein
TrEMBL	A0A498JYK8	1e-64	A0A498JYK8_MALDO; Uncharacterized protein
STRING	XP_009361875.1	9e-71	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3459	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	2e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000209483