PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000209705
Common NameDAM3
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25821.3 Da    PI: 6.9425
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000209705genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   k+i+n + rqvtfskRr g++KKAeELSvLCda++a+iifsstgkl+ey+s
  MDP0000209705  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADIALIIFSSTGKLFEYAS 59
                   68***********************************************86 PP
2K-box43.81.1e-15921761999
          K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke....kelqeenkaLrkkle 99 
                     ++++L kei    +++R++ Ge+++ Lsl+eLqqLe+ Le +l  + +kK+e ++++i++lq+ +     +l een++Lr+++ 
  MDP0000209705  92 SNYSRLSKEIAAKSHQLRQMRGEEIQGLSLEELQQLEKSLEAGLGGVVEKKSEKIMKEINDLQRNMnvqaMQLTEENERLRQQVV 176
                    67999*********************************************************997522226899********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.557161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002655.42E-40275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-31375IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.76287181IPR002487Transcription factor, K-box
PfamPF014869.2E-1592175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADIALIIFSS TGKLFEYASS  60
SMKEILERHN LHSKNLDKLE QPSLELQLVE NSNYSRLSKE IAAKSHQLRQ MRGEEIQGLS  120
LEELQQLEKS LEAGLGGVVE KKSEKIMKEI NDLQRNMNVQ AMQLTEENER LRQQVVEKSN  180
GRRLVHVDSE NLITEEGQSS ESVTNLCKSN SGPQDYDNSV TSLKLGCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-22169169MEF2C
5f28_B5e-22169169MEF2C
5f28_C5e-22169169MEF2C
5f28_D5e-22169169MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.135150.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1649980.0KP164998.1 Malus domestica dormancy-associated MADS-box transcription factor (DAM3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008363737.11e-161MADS-box protein JOINTLESS-like isoform X1
RefseqXP_008363738.11e-161MADS-box protein JOINTLESS-like isoform X1
RefseqXP_008363739.11e-161MADS-box protein JOINTLESS-like isoform X1
SwissprotQ9FUY61e-107JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A0D5CT771e-163A0A0D5CT77_MALDO; Dormancy-associated MADS-box transcription factor
STRINGXP_008363737.11e-161(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-89MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]
  2. Wisniewski M,Norelli J,Artlip T
    Overexpression of a peach CBF gene in apple: a model for understanding the integration of growth, dormancy, and cold hardiness in woody plants.
    Front Plant Sci, 2015. 6: p. 85
    [PMID:25774159]