PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000209974
Common NameMYBR20
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 680aa    MW: 75151.2 Da    PI: 9.6849
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000209974genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07582631147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
    MDP0000209974 582 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 631
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.78E-7391478IPR029071Ubiquitin-related domain
CDDcd017690.00281400467No hitNo description
PROSITE profilePS5129415.731577636IPR017930Myb domain
SMARTSM007173.5E-7581634IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10582632IPR009057Homeodomain-like
SuperFamilySSF466891.37E-15583664IPR009057Homeodomain-like
CDDcd116605.88E-17583633No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MVMQKRLDYG FNGYQVPVTP KAYRSARKRR AVRKMVEDNA MGAFDLLATV AGKLLLEGES  60
SPASSHTSIG KVQCAGIKEN YLAGDKTLKV EPCDRGSCDR IPLVSDHMST GQNLSSCSKA  120
SPVHQNESHS VMTTSNGSER FVSDMLASGK CKNELGSLTG KIEAGYSGNR ESGECKLDNK  180
VKILVKDETN KSGEVVTGNG PDMCSFQDPV VWEGEPPPLV SSDSSTKVPM YVDHIPQRSF  240
PASRDDVKLV GRDDDENFFG CTHPSTAMKY SRPAPSRIGD RRIRKILASK YWKVAPKSKD  300
ETHSNSYRDM KPNYHNRKNC YKRQRSQMNM PFKKRRLFDR STVPNPDQGI SREGFFDLRG  360
KGTNVNASAS CSKMQATGMS SSVGGQHSSF QSRNSHVKLR IKSFRVPELF IEIPETATVG  420
SLKKTVMEAV TAVLGGGLCV GVLLQGKKVR DDNKTLLQTG ISQDDHLDSV GFSLEPNPSR  480
TPLPLCSDGS PSMLPCDEVK PLTRYQPGPT GEPLPEPHMA SFGSYIESDH DSAPSPTDMS  540
AEKSTTDSKA LVAVPDLSMD ALAVVPGNRK SRRFDIGQRR IRRPFSVTEV EALVQAVEKL  600
GTGRWRDVKL RAFDNAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLTAHA  660
YWSQQQAKQQ LKQPETCLLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-565666721107Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.69710.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281048.10.0telomere repeat-binding protein 5-like
TrEMBLD9ZJ810.0D9ZJ81_MALDO; MYBR domain class transcription factor
STRINGXP_008384952.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-142TRF-like 2