PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000210155

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 481aa MW: 52128.9 Da PI: 5.5519

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000210155	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00012	377	409	17	54
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ L++l+ + +K + a++L +A+eYIk L MDP0000210155 377 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 409 55666677777776.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.668	360	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-7	370	418	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-11	370	428	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.47E-5	370	414	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MAEEFQAGIC GGNSWWNSSR HVLVASPCSM GFNDHMGGFG YPNDMVDIKA TRSSCGEINN 60 SVSDDHDDGD HSKSIANFDQ YQDVQKPDHD PTLQMLGFGL PSSLSSTHSD FNQALLVSRS 120 SSGRGESNFH NPMLQEDMGL NAKLNTAAXG DEESXSIING FKPMNQDFSL DQLGSPSSSG 180 FPISSSSSAA NSYGFSSALM LQTLFDSVPV PQTQPQQSLF NNNHFSNDLF LSPSPTSNCW 240 PPRYSPNSCL RPSSLPKQLQ PGGNGGSGLQ FSNNINTPFW NAPAPAALNP DNTVRSSNDL 300 FSSSQAQYTT PSPSPFHEKK PNSNNFTKAN TNEDVQDSSS SVVKKSSSSA GEPVFKRARI 360 ETPSPLPTFK VRKEKLGDRV TALQQLVSPF GKTDTASVLH EAIEYIKFLH DQVSVLSTPY 420 MKNGAPMQQQ HGIDKMREAS EGAKQDLQSR GLCLVPISST FPVANETTAD FWTPTFGATF 480 R

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MAEEFQAGIC GGNSWWNSSR HVLVASPCSM GFNDHMGGFG YPNDMVDIKA TRSSCGEINN  60
SVSDDHDDGD HSKSIANFDQ YQDVQKPDHD PTLQMLGFGL PSSLSSTHSD FNQALLVSRS  120
SSGRGESNFH NPMLQEDMGL NAKLNTAAXG DEESXSIING FKPMNQDFSL DQLGSPSSSG  180
FPISSSSSAA NSYGFSSALM LQTLFDSVPV PQTQPQQSLF NNNHFSNDLF LSPSPTSNCW  240
PPRYSPNSCL RPSSLPKQLQ PGGNGGSGLQ FSNNINTPFW NAPAPAALNP DNTVRSSNDL  300
FSSSQAQYTT PSPSPFHEKK PNSNNFTKAN TNEDVQDSSS SVVKKSSSSA GEPVFKRARI  360
ETPSPLPTFK VRKEKLGDRV TALQQLVSPF GKTDTASVLH EAIEYIKFLH DQVSVLSTPY  420
MKNGAPMQQQ HGIDKMREAS EGAKQDLQSR GLCLVPISST FPVANETTAD FWTPTFGATF  480
R

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.2412	0.0	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008383958.2	0.0	transcription factor bHLH112 isoform X1
TrEMBL	A0A498IXM4	0.0	A0A498IXM4_MALDO; Uncharacterized protein
STRING	XP_008383958.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	1e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000210155