PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000211395
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 247aa    MW: 28021.6 Da    PI: 9.0488
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000211395genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001595117223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +C+ C + ++++ +L  H +  H
  MDP0000211395  95 SCSVCYRAYPTSRLLSIHVSEaH 117
                    6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.96792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003551594117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SMARTSM003550.028132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MASMDVEEAX LGFPHWXPLR RKFAPESPFF ASGNIERELL AKQIALDLTE DEKHQLREMV  60
DXEGRGCFCP IVGCGAXLSS LEDFEDHYNA RHTASCSVCY RAYPTSRLLS IHVSEAHDSF  120
FQAKVARGYL MYECLVEGCG LKFKNYKSRQ QHLVDKHKFP TSFEFFKKAL PSKKQRQKNQ  180
RRQATSKKAE SSSMQVDNET MDGLVSGVSK LSTSDSTPSA ISFGRRPTRG MTFVPRAVQR  240
EKKPDXT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178KKQRQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379104.20.0zinc finger protein 511
TrEMBLA0A498J1090.0A0A498J109_MALDO; Uncharacterized protein
STRINGXP_008379104.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-113zinc ion binding;nucleic acid binding;zinc ion binding