PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000212563

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C3H

Protein Properties

Length: 142aa MW: 15336.2 Da PI: 4.3402

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000212563	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	42.1	1.5e-13	110	132	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++++tG Ck+G++CkF+H+ MDP0000212563 110 EDCSYYLKTGSCKFGSNCKFNHP 132 89********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.22E-7	104	134	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.094	106	134	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-6	106	133	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.0E-11	110	132	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-6	112	132	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MALSEATSVV PPNPETPSTN HAHSDQGSLP SSPDPDPTPS DLDHAVLDRE GGGGRSWQSE 60 QSYQSDGGGG EGWGGNQGWE EDGGEVEEKK AEETQESNRR YQYPVRPEAE DCSYYLKTGS 120 CKFGSNCKFN HPVSRKTNQG CS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13055	1e-93	fruit\| leaf\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028959756.1	6e-37	zinc finger CCCH domain-containing protein 67-like
TrEMBL	A0A498KS16	8e-40	A0A498KS16_MALDO; Uncharacterized protein
STRING	XP_008353157.1	5e-63	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	3e-15	C3H family protein

Link Out ? help Back to Top
Phytozome	MDP0000212563