PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000215269

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 298aa MW: 32183.5 Da PI: 7.0489

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000215269	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	1e-10	146	193	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq MDP0000215269 146 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 193 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.67E-10	140	197	No hit	No description
SuperFamily	SSF47459	5.37E-18	140	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-18	142	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	142	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-8	146	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	148	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MDPPLINESS FSAANPASYS LAEIWPISGE PGGSGGGLGL RMGNLGQSFG GLGDSSVNRD 60 GSLEESTVTE QSGGGCGGRK RRDKYSGGKR MKLAGSSNEN GSLKAEVEES SAAGDKKPAE 120 ESTKPSEPPK QDFIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVIGKAL 180 VLDEIINYIQ SLQHQVEFLS MKLEAVNSRM NMNPAIEAFP PKDNVNLRLG IFWVQXFNLG 240 DASRNVNVCQ QRSVXVLGAQ PFDAAGLLFG SHTPREYAQS SQPEWLHMQV GGSFERAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	83	RKRRDK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12791	1e-167	fruit\| root\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP689421	1e-149	KP689421.1 Prunus pseudocerasus isolate Unigene13496 bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008374503.3	1e-158	transcription factor bHLH79-like isoform X2
Refseq	XP_028959835.1	1e-158	transcription factor bHLH79-like isoform X3
Swissprot	Q9LV17	6e-80	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A498JMM1	1e-154	A0A498JMM1_MALDO; Uncharacterized protein
STRING	XP_008374503.1	1e-158	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	2e-74	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000215269

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]