PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000215412

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Nin-like

Protein Properties

Length: 157aa MW: 18204.9 Da PI: 11.1312

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000215412	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.2	1.4e-27	30	79	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+dl+kyF+lpi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl MDP0000215412 30 ANIALSDLAKYFDLPIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 79 79**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.622	14	99	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-22	31	79	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MSDSSEDQES GRSSPGITEK KKRAPSGRIA NIALSDLAKY FDLPIVEASR NLNVGLTVLK 60 KKCREFGIPR WPHRKIKSLD SLIRDLQEET EIQQKENKAA ALAVLKRQRM LERERESIER 120 RPFLEMKTET KRFRQDVFKR RHRARALRSQ GLSTSSN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.1476	4e-59	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009344678.1	1e-105	PREDICTED: protein RKD5
Swissprot	O81791	3e-57	RKD5_ARATH; Protein RKD5
TrEMBL	A0A498KFD7	1e-106	A0A498KFD7_MALDO; Uncharacterized protein
STRING	XP_008354637.1	1e-106	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-59	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	MDP0000215412

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]