PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000215770
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 176aa    MW: 18973 Da    PI: 8.4821
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000215770genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.8e-1115555698
                   TTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3 56 sgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                   ++r++lt+GW+ Fv+ n+L +gD++vF   + +++ l+v++++
  MDP0000215770 15 PRRHLLTAGWSTFVNRNKLVAGDSIVFL--RAENGDLCVGIRK 55
                   689*************************..4488889***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.546157IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-121457IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-81455IPR003340B3 DNA binding domain
CDDcd100174.03E-81555No hitNo description
SuperFamilySSF1019363.79E-101554IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSTTRYGSSG TFTEPRRHLL TAGWSTFVNR NKLVAGDSIV FLRAENGDLC VGIRKGKRGL  60
DGGGGNEVAS RWNNSHSSGD GSGXCVLPYD RLCVFLREED NKMRNGGGGL SPNGNMRGNG  120
RVRPESVVEA VTMAANGQPF EMVYYLRASM PVLLGENPDS KTIPGLDSGD LERWGL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008359296.22e-72auxin response factor 18-like isoform X2
RefseqXP_017183531.23e-72auxin response factor 18-like isoform X1
SwissprotQ653H71e-32ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A498KRQ81e-73A0A498KRQ8_MALDO; Uncharacterized protein
STRINGXP_008359296.11e-71(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.18e-25auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]