PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000216521
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 249aa    MW: 28386.8 Da    PI: 5.3778
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000216521genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP52.99.9e-172002383876
                    EEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
            SBP  38 leqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     ++ f qqC  fh+l +fD++krsCrrrLa+hnerr+k+
  MDP0000216521 200 STKGFGQQCRIFHQLPDFDDTKRSCRRRLAGHNERRKKN 238
                    6788*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.981155238IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.8E-13195242IPR004333Transcription factor, SBP-box
PfamPF031101.3E-9204237IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.107.2E-5204225IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MAPVPNTRPN GDDEDPRPIK QPRLGEAEDS KEEKPKLKLD TDPMALDDQS PLVEVEDEPE  60
VWEGMITDET TDNQFLIHCH NVLLPYDHMY VHKRATRFQT NCCLPQVSIT LSLLVATSFQ  120
DLQYQAITRP EMDVISRTMM XSSNLNPNTL MFALLAYQTM ENFFAEWWAL RSSSSLSSNG  180
GEGGAMRRCQ ADRLCLFLAS TKGFGQQCRI FHQLPDFDDT KRSCRRRLAG HNERRKKNLA  240
ESHVVEGSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.26e-14squamosa promoter binding protein-like 4