PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000217009

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YB

Protein Properties

Length: 234aa MW: 23898.5 Da PI: 9.6865

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000217009	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	150.5	3.3e-47	59	135	2	78
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfed 78 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+ MDP0000217009 59 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEE 135 89*************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.17E-32	38	134	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.3E-44	53	140	IPR009072	Histone-fold
Pfam	PF00808	9.2E-28	64	128	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	9.1E-12	92	110	No hit	No description
PROSITE pattern	PS00685	0	95	111	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	9.1E-12	111	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MRYYTARSNG XQRLSVSLSL XPLAPTTKPS ETAGMADSDN DSGGPNDRSQ AQSGELSARE 60 QDRFLPIANV SRIMKKALPA NAKISKDAKE TVQECVSEFI SFVTGEASDK CQREKRKTIN 120 GDDLLWAMTT LGFEEARRAL WGGGGGREKD SSSGGGGAAS GGGGGGGISS GISGGGYNGG 180 YGGMVMMGHH NHHQGHVRGS GGGYQQNHMA MGGGGGRKSG GSSGXGNGGA SVVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-40	59	140	2	83	Transcription factor HapC (Eurofung)
4g92_B	1e-40	59	140	2	83	Transcription factor HapC (Eurofung)
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14413	6e-93	bud\| fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC787663	9e-83	KC787663.1 Brassica napus transcription factor subunit NF-YB3B (NF-YB3B) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008229927.1	1e-84	PREDICTED: nuclear transcription factor Y subunit B-3-like
TrEMBL	A0A220D3B7	5e-82	A0A220D3B7_MALDO; Nuclear transcription factor Y subunit B-2-like
STRING	XP_008357961.1	1e-84	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-58	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	MDP0000217009