PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000217639
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 428aa    MW: 49536.2 Da    PI: 7.0895
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000217639genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-09370394226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    + + C +++rtGtC+y +rC ++H+
  MDP0000217639 370 GKKDCLHYMRTGTCQYENRCLYNHP 394
                    6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.394368396IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011368395IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-7370394IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.16E-5370395IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MPLPEKADDF DLTSQNPLLV ASSQQTQQPS FSRRPRQRKN YQCCQRRVFC YRCHLQCWSK  60
FIGVAFRLNP IDDQSGHPPS IPSHAPSDLD PEILELIRTL DPAVIEWIRN LDPAFLDEIR  120
KIQELSLKEK XEKEKGKERE TQEETEKERE SERVKAAAEE EGMRTVMMVS KDKAMQEEEL  180
AEKQDQTKSR VIIYPNSEVL EIFVGEVSED KAKRREELAE KQDQTENKKK VSKDKAKQRE  240
ELVENQVQTE SKIETIRVYP ASALIGSAKK CMYACVNXFV YYAXMMIFPA ELTQKEKVSK  300
DKAKQREELA VKQDQTESKK VFKDKAKQRG ELAEKQDQTR NKYCPGRXKR EPSVAPALKL  360
NFLGLPIRPG KKDCLHYMRT GTCQYENRCL YNHPDPTPAE ESCPQSAYES HGIHSETTEW  420
NDVITLVL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.33371e-154cell culture| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959747.11e-135vicilin-like seed storage protein At2g18540 isoform X35
TrEMBLA0A498JJL41e-145A0A498JJL4_MALDO; Uncharacterized protein
TrEMBLA0A498JK691e-147A0A498JK69_MALDO; Uncharacterized protein
STRINGXP_008352151.19e-75(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.18e-15C3H family protein