PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000218395
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 908aa    MW: 103508 Da    PI: 9.6615
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000218395genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.69.7e-0919632267
           FAR1 22 skrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67
                    ++ +e+t+r f Cskeg++ ++k++  k +++raetrtgC+ak+k
  MDP0000218395 19 IRKLNEVTSRIFACSKEGFPLQDKRD-YKIKKPRAETRTGCHAKMK 63
                   466788****************9999.9*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-51863IPR004330FAR1 DNA binding domain
PfamPF105516.1E-32184278IPR018289MULE transposase domain
PfamPF038683.4E-11686736IPR005568Ribosomal protein L6, N-terminal
CDDcd131562.88E-80756908No hitNo description
Gene3DG3DSA:2.30.30.302.2E-32761848IPR014722Ribosomal protein L2 domain 2
SuperFamilySSF501042.26E-24762848IPR008991Translation protein SH3-like domain
PfamPF011593.4E-36801908IPR00091560S ribosomal protein L6E
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MPTDEKWDLV LEKIVTTRIR KLNEVTSRIF ACSKEGFPLQ DKRDYKIKKP RAETRTGCHA  60
KMKPECAXML PSQRKISDSQ AAELDLAEES GIXLRESYEL MAKHVGGRES LGYTRVDQKN  120
YLLSRRQRKM VYGEAGSLLR YFQGKTVENP SFFYAVQLDN EEQITNIFWA DAKMISDYGH  180
FGDVVSFDTT YKTNRAGRPF AVFXGLNHHR EIVVFGAALM YDETAPSFIW LFETFLXAMS  240
NKAPKTIFTD QDAAMMNAIP HVMPDTYHRL CLWHMMQNAL KNVNCVFKGN SGVREVLKXF  300
IDEYEDEDEF LVAWDEMLVK HNVQGKALEW LKGIKKLRKK WAKAYVKMAW SAGMTTTGIS  360
KSFNGRLKEY LQSDYNVVQF FMHFERVLDD QRYKEYQAEN KLCYKNAQVK VPAMMVKQAG  420
DTYTKAIFEE FQEQYGESLD LRIKSTVDDG EVVVYTVFPP YGAFMERHVR RERDXXIICC  480
SCRLFEIKIS SRAAESDETY EIALSCAHKL GKLTEDKLSL QINGKTEDEA KGLKKRETCR  540
GRRRLKSCLE KAIAKRKRSS NSHLSKETCV PKETVAAGCY IASPXPFFCA PVMAEPRGPF  600
PVVNTLNSGH DMLKYMXWMT YEEPQYSTFQ ELLQTXPTGY SVAHQDLNKS SXCNGSMRVW  660
KGMVTKRADN PGPLGMAPEP SIAGVVRNPD LIRGIGKYSR SMMYHKRGLW AIKAINGGVF  720
PRHDKKAAAV APAVKPPKFY PADDVKKPLV NKRKAKPTKL RASITPGTVL IILAGRFMGK  780
RVVFLKQLSS GLLLVTGPFK INGVPLRRVN QSYVIGTSTK IDISGVNVDK FDDKYFAKEV  840
QKKKKKGEGE FLEVETEDKN VIPQVRKEDQ KAVDTPLIEC IDTIADMKEY LAARFSLKQG  900
MKPHELVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_LG6e-886949081021960S ribosomal protein L6
4v7e_CE6e-886949081021960S ribosomal protein L6E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1541557RRRLKSCLEKAIAKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.37610.0bud| cell culture| flower| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117937.10.0protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008351321.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-88FAR1-related sequence 5