PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000219162

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WOX

Protein Properties

Length: 380aa MW: 43245.3 Da PI: 7.6803

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000219162	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.4	4.4e-22	89	148	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ MDP0000219162 89 SRWNPTPEQLRALEELYRRgTRTPSAEQIQHITAQLrkygKIEGKNVFYWFQNHKARERQ 148 7***************99************************************97 PP
2	Wus_type_Homeobox	115.6	2.5e-37	88	150	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ MDP0000219162 88 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRKYGKIEGKNVFYWFQNHKARERQKR 150 79***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.6E-5	86	153	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.3E-9	89	148	IPR009057	Homeodomain-like
Pfam	PF00046	8.9E-20	89	148	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-12	89	154	IPR009057	Homeodomain-like
CDD	cd00086	2.34E-6	90	150	No hit	No description
PROSITE profile	PS50071	11.224	94	149	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MWXMGYNDGG HGDFNMPDSF NGRKLRTLIP RSLPSVNNTS STITTPPCLN RSAIYGSHDF 60 LTQYHQLAAM AEXNKRSEFL NTPQVVVSSR WNPTPEQLRA LEELYRRGTR TPSAEQIQHI 120 TAQLRKYGKI EGKNVFYWFQ NHKARERQKR RRQMESSALS AEHDQQLQIS MTSTDNQKKE 180 ELLGASRTGF EVAETKNWAP STNCSTATXV EESVSIQRTA KAAAAECRTD GWIQFDEEEL 240 EQRRNFVERN ATWQMMQLSC PSHPHPHPPT HLINTPPTCD STTARSRAAA TVRRTDQRLF 300 KSHDLSIFIA PYTSETGFNT EQDHGCEESQ TLQLFPLRSG HVKASANANE LSVNDKDHTE 360 LSASFSAHPY PFFEFLPLKN

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MWXMGYNDGG HGDFNMPDSF NGRKLRTLIP RSLPSVNNTS STITTPPCLN RSAIYGSHDF  60
LTQYHQLAAM AEXNKRSEFL NTPQVVVSSR WNPTPEQLRA LEELYRRGTR TPSAEQIQHI  120
TAQLRKYGKI EGKNVFYWFQ NHKARERQKR RRQMESSALS AEHDQQLQIS MTSTDNQKKE  180
ELLGASRTGF EVAETKNWAP STNCSTATXV EESVSIQRTA KAAAAECRTD GWIQFDEEEL  240
EQRRNFVERN ATWQMMQLSC PSHPHPHPPT HLINTPPTCD STTARSRAAA TVRRTDQRLF  300
KSHDLSIFIA PYTSETGFNT EQDHGCEESQ TLQLFPLRSG HVKASANANE LSVNDKDHTE  360
LSASFSAHPY PFFEFLPLKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.15483	0.0	fruit\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008364689.2	0.0	WUSCHEL-related homeobox 1-like
TrEMBL	A0A498JSV3	0.0	A0A498JSV3_MALDO; Uncharacterized protein
STRING	XP_008364689.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2892	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	4e-59	WUSCHEL related homeobox 1

Link Out ? help Back to Top
Phytozome	MDP0000219162