PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000219846
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 178aa    MW: 19980.6 Da    PI: 6.5028
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000219846genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-10771012247
                      T-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqky 47 
                      ++W++Ia +++ gRt++++k++w+++
    MDP0000219846  77 RRWSKIAGRLP-GRTDNEIKNHWNTH 101
                      38*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.96E-974111IPR009057Homeodomain-like
PROSITE profilePS500906.99274102IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-1474118IPR009057Homeodomain-like
CDDcd001672.57E-777102No hitNo description
PfamPF002498.0E-877101IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MLLILIVLEG XSLSTFAFLL GCXTSLYSHL XIYPSSPASL XIPSRFFNSV SDWSICICVW  60
MYIRTCHXPD EGSGXXRRWS KIAGRLPGRT DNEIKNHWNT HIKKKLLRMG IDPVTHEPLH  120
KEEELPSNIK ENNSSSSSHD HDDHDNNLPA DKSINGVHNS QENDQNVVNS SGSEGINS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354562.12e-48PREDICTED: protein ODORANT1-like
RefseqXP_009354566.12e-48PREDICTED: protein ODORANT1-like
TrEMBLA0A498K0J63e-41A0A498K0J6_MALDO; Uncharacterized protein
STRINGXP_009354562.16e-48(Pyrus x bretschneideri)
STRINGXP_009354566.16e-48(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1689547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.12e-23myb domain protein 85