PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000220168
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 24770.4 Da    PI: 9.9291
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000220168genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.82.6e-271059251
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   rien++nrqvt+sk rng++KKA+EL vLCdaev++i++ss+gk++ey+s
  MDP0000220168 10 RIENSTNRQVTYSKXRNGLFKKANELTVLCDAEVSLIMVSSSGKVHEYIS 59
                   8***********************************************86 PP
2K-box79.86.7e-2771166196
          K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                    yqk+ g + +++++e +qq+l+kLk+ + nL+r++R+++G++L++Ls+ eL+ Le++ + ++  iR++K +++ ++i++++kk k++ + n++L++
  MDP0000220168  71 YQKTLGIDIWSSHYEAMQQHLKKLKEVNMNLRRQIRQRVGDCLNDLSFDELRGLEEEXKAAVDVIRQRKVRMISNKIDTTKKKVKSQADVNMSLHE 166
                    78899999************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.02161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.87E-37280No hitNo description
SuperFamilySSF554552.49E-35396IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014869.2E-1882166IPR002487Transcription factor, K-box
PROSITE profilePS5129713.92884182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MARGKIQIRR IENSTNRQVT YSKXRNGLFK KANELTVLCD AEVSLIMVSS SGKVHEYISP  60
STTTKQLLDQ YQKTLGIDIW SSHYEAMQQH LKKLKEVNMN LRRQIRQRVG DCLNDLSFDE  120
LRGLEEEXKA AVDVIRQRKV RMISNKIDTT KKKVKSQADV NMSLHELRMK GIMIQCVAAH  180
QMEEDLPYLR SSNQSHPTNL XCXAAGAASD STTTAVIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-15159159MEF2 CHIMERA
6byy_B9e-15159159MEF2 CHIMERA
6byy_C9e-15159159MEF2 CHIMERA
6byy_D9e-15159159MEF2 CHIMERA
6bz1_A8e-15159159MEF2 CHIMERA
6bz1_B8e-15159159MEF2 CHIMERA
6bz1_C8e-15159159MEF2 CHIMERA
6bz1_D8e-15159159MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.271670.0cell culture
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2657990.0AB265799.1 Pyrus x bretschneideri PbMADS1 mRNA for transcription factor MADS, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028962429.11e-118floral homeotic protein DEFICIENS
SwissprotE0CPH42e-77AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLD9ZJ431e-116D9ZJ43_MALDO; MADS domain class transcription factor
STRINGXP_008221326.12e-94(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-71MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]