PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000220675
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 391aa    MW: 42198.2 Da    PI: 7.3281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000220675genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.00052532911255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  MDP0000220675 253 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 291
                    6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.681241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-10251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.09E-6251295No hitNo description
Gene3DG3DSA:4.10.280.102.5E-7255298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MNRGGCQSSP VQQMIAGNPN WWSINSMRPP STQPSMNISP FFQPTPPPLP PNFLIPQFAP  60
SNNNTSPSST TSSSGLAIPS WHIENNNQEL PESWSHLLLG GIVGEDEKGA IMRQFHQAAK  120
KLENWDEQIL NSTQAPNAPV VDVKQENSGN SNGFVYGHHH GNDHIXGFNP SAAALSSLSQ  180
IMQSTAASAA SSPKSSCVTS FSNNNILDFS SKSDVRHPPP HRSSDQCNST GNGGALKRAR  240
VQPSSTPTTF KVRKEKLGDR ITALHQLVSP FGKTDTASVL LEAIGYIRFL QSQIEALSSP  300
YLGSGSGSMR QQPQSAVHGE RNCMFPEDPG QXLNDNCMKR KXASEQDPHE EPKKDLRSRG  360
LCLVPVSCTL QVGSDNGADY WAPALGCGGF Q
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.112490.0bud| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008367899.20.0transcription factor bHLH68-like
SwissprotQ8S3D11e-96BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A498I0E40.0A0A498I0E4_MALDO; Uncharacterized protein
STRINGXP_008367900.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-88bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]