PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000220708

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 176aa MW: 19277.8 Da PI: 8.1425

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000220708	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.4	3.3e-40	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l+++pe++r d+++sl+yeAear+rdPvyG++g i+ l++++ ql+++la MDP0000220708 12 SCAACKSLKRRCTPTCIFAPYFRSDEPKKFAQVHKVFGASNVSKILTEVPEDQRADTVNSLAYEAEARLRDPVYGCIGAISMLERKMIQLQHDLAI 107 6*********************************************************************************************99 PP DUF260 97 lkee 100 ++++ MDP0000220708 108 ARAR 111 9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.086	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.0E-40	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MKGSHEPRSS SSCAACKSLK RRCTPTCIFA PYFRSDEPKK FAQVHKVFGA SNVSKILTEV 60 PEDQRADTVN SLAYEAEARL RDPVYGCIGA ISMLERKMIQ LQHDLAIARA RLVCYAPKNS 120 PSSSSSCSCC PMLDEGTFSG FPAWSGLNGN NFSQNASELI SQHGQTSDFS YSSYIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	7	116	6	115	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	7	116	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008374922.1	1e-130	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	2e-61	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A498KKS3	1e-128	A0A498KKS3_MALDO; Uncharacterized protein
STRING	XP_008374922.1	1e-129	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	4e-52	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	MDP0000220708

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]