PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000220752
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 843aa    MW: 97176.1 Da    PI: 9.0748
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000220752genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.72.6e-2093176490
           FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    n YA + GFs+rk + ++ ++n+ + +r+f Cskeg++ +e+   e ++ +r  trtgCka+++ + + +g+w++++l+ +HnHe+a
  MDP0000220752  93 NIYAFKKGFSIRKGNIRRDSHNN-VRQRDFFCSKEGFQPDEDLC-EVKKVRRLDTRTGCKAMIRFTVD-NGVWKISHLNPDHNHEFA 176
                    67***************997776.****************9998.899999****************9.***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1893176IPR004330FAR1 DNA binding domain
PfamPF105514.5E-29299392IPR018289MULE transposase domain
PROSITE profilePS5096610.188577613IPR007527Zinc finger, SWIM-type
SMARTSM005755.0E-4588615IPR006564Zinc finger, PMZ-type
PfamPF044341.6E-4589612IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MSWNSESVTA LLSPRSVPNS NVLFSIPDDP NSRSQPRSLP KRRRIRELFW VMDNDWRGKV  60
LEKNDKEEIF EAIDELKVGM EVSNEAEAYN LCNIYAFKKG FSIRKGNIRR DSHNNVRQRD  120
FFCSKEGFQP DEDLCEVKKV RRLDTRTGCK AMIRFTVDNG VWKISHLNPD HNHEFARPEE  180
RQFLRSGRHI PGVRAALISS MVDGSPKPTQ SYSLLGKESG STENVGSTNK GCHNCLQRKN  240
EEMLEGRDGQ SLLNYFRHKQ AEDPNFFYSV QVDQFNRATN FFWRDSRSKL DYDCFGDAVC  300
FDTTFRTRKY NLICAPFVGV NHHCKNVLFG CAFMSDVSAD SITWLLETFM VSMGNKQPKT  360
IFTDEDIAMG NAMVSILPET RHRLCIWHIS KNAAQYLGSH STNPEFKEHF NKCFHDCLTE  420
AEFEATWNDM IIKFNLEGNV WLKKLYSLRE KWCPAFSLDT YTANIRSPHR GESITGTFHQ  480
VSTKTMDLIG LVHHYEKKTR VLRTAELEED FRCKNGTPHL RVNSGIFKHA SAEYTVKMYS  540
YFENELMSIF AVRMIEVGND GNQYIYEAIE EGNQRAYMID YNSTTAMVSC SCKLFESMGI  600
LCRHSLKVLD LKNFTCLPPQ YIMKRWTKGA KKRVAVSGDS FESSYKMGKS SQSSRLSSLM  660
HEANNVFSVA ALCDSGTRIV RRKLEEAIKL LESDEVVGRN RKERMCKVLL FCAKDCICSG  720
NMFGTAIRCI ARKPKPPMKP IELNTPPEQT QTITRAIFDI VKEHGPLTIS ETWDHVKEVG  780
LRGLTSKRHM KIMLRWMRER QKLRLICNHV GAQKQFLYTT WFTKHNFRQK PKPGSDSSQP  840
KSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14044KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338042.30.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A251NC830.0A0A251NC83_PRUPE; Uncharacterized protein
STRINGXP_008338042.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-112FAR1-related sequence 5