PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000222305
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 373aa    MW: 41410.4 Da    PI: 6.5043
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000222305genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-18200254256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  MDP0000222305 200 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 254
                    677889***********************************************98 PP
2HD-ZIP_I/II126.21.5e-40200290192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  MDP0000222305 200 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLNKELQELR-ALK 290
                    69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.36E-19189257IPR009057Homeodomain-like
PROSITE profilePS5007116.973196256IPR001356Homeobox domain
SMARTSM003891.9E-16198260IPR001356Homeobox domain
CDDcd000862.76E-16200257No hitNo description
PfamPF000461.3E-15200254IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-17200254IPR009057Homeodomain-like
PROSITE patternPS000270231254IPR017970Homeobox, conserved site
PfamPF021832.0E-10256290IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.7E-22256302IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MELCLSLGDH KALAEPSDQT TTTTKTTGFC MNLSIGPSCA AATPPPPPPP RDEEADKKRD  60
DDDDDDDDDH IHVDDHIPLQ LDXLPWPTSP CNQIQNAGVL SMNVINKAQE VVAAASSSHT  120
NSGSSSFHIM DIGLCSNNNH SKGSAGDGLN NNYHNVYNYK RRAHSAEGQG DDEGERASNS  180
RVGSDDEEDD IINGNANTCR KKLRLSKEQS AFLEESFKEH HTLNPKQKLA LAKQLNLRPR  240
QVEVWFQNRR ARTKLKQTEV DCEFLKRCCE TLTEENRRLN KELQELRALK ATHHSNPFYM  300
QSPATTLTLC PSCERTATTS NAAINTTNNT YNNNNNKVLS ISTTKVQAAK FPLNRPSFYP  360
FFQPKSHPSS AAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248256RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350188.20.0homeobox-leucine zipper protein HOX11-like
SwissprotP466651e-72HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A498KDN10.0A0A498KDN1_MALDO; Uncharacterized protein
STRINGXP_008350188.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1891346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-57homeobox from Arabidopsis thaliana