PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000223109

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 172aa MW: 20010 Da PI: 6.2428

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000223109	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.7	8.3e-38	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaC++lrr+C +C lapyfp e+ kfa vh++FGasnv+k+++ ++e++reda++++vyeA ar+rdPvyG+++ i++lq+ +e+l+++l++ MDP0000223109 15 PCAACRMLRRRCDINCSLAPYFPIEEIDKFAGVHRVFGASNVIKMIQMVEETRREDAVKAIVYEATARIRDPVYGSTAAIFHLQKMIEELRSQLET 110 7**********************************************************************************************9 PP DUF260 97 lkee 100 +k++ MDP0000223109 111 IKSQ 114 9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.519	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-37	15	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MDGQITPMRT RVHQPCAACR MLRRRCDINC SLAPYFPIEE IDKFAGVHRV FGASNVIKMI 60 QMVEETRRED AVKAIVYEAT ARIRDPVYGS TAAIFHLQKM IEELRSQLET IKSQVLELQQ 120 HRDQLLGILM NNVHSLDLFS DMHDPMFGES SKVQEDPVWD LEPRDERQRE RV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-34	6	116	2	112	LOB family transfactor Ramosa2.1
5ly0_B	9e-34	6	116	2	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017188837.1	1e-126	LOB domain-containing protein 1-like
TrEMBL	A0A498JAZ8	1e-123	A0A498JAZ8_MALDO; Uncharacterized protein
STRING	XP_008233120.1	1e-89	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14068	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	8e-44	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	MDP0000223109