PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000223651
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YA
Protein Properties Length: 200aa    MW: 22103.8 Da    PI: 10.2978
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000223651genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.53.9e-3245101158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hA++R Rg+gGrF
  MDP0000223651  45 DGPIYVNAKQYHGILRRRQSRAKLEAHNKL-LKARKPYLHESRHLHAVNRVRGTGGRF 101
                    57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.9E-3543104IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.11244104IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-2747101IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.4E-244769IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068604969IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.4E-2478101IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGCVPYPYVD PYFSGFLTAY GPQAMSHMLG MAPTRVPLPP DLAQDGPIYV NAKQYHGILR  60
RRQSRAKLEA HNKLLKARKP YLHESRHLHA VNRVRGTGGR FLSTKRQSDQ NPSSNTHHVS  120
DSISSHQKDT GGTESNHSGS SDFLPSVALH PDMTSVSNTN DNFQQPDRRF SAIPPHMSGA  180
MQFPGGFMRA GNQHCASVVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2145114274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.14221e-139root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028944675.11e-143nuclear transcription factor Y subunit A-7-like
TrEMBLA0A498KFE51e-144A0A498KFE5_MALDO; Uncharacterized protein
STRINGXP_008344031.11e-144(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.18e-42nuclear factor Y, subunit A3