PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000223691
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 346aa    MW: 38111.6 Da    PI: 5.1883
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000223691genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.2e-10534130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +++WT eE+e l  +v+++G+g Wk I + 
    MDP0000223691  5 KQKWTVEEEEALRAGVRKHGTGKWKDIQKD 34
                     79*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.285161IPR017930Myb domain
SuperFamilySSF466896.75E-12251IPR009057Homeodomain-like
SMARTSM007173.7E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-11552IPR009057Homeodomain-like
PfamPF002492.9E-7533IPR001005SANT/Myb domain
CDDcd116601.35E-18651No hitNo description
SMARTSM005261.0E-5193270IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150415.619195275IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.78E-7197276IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.6E-6197272IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGNPKQKWTV EEEEALRAGV RKHGTGKWKD IQKDPEFNPF LSSRSNIDLK DFGSKFARLL  60
DSWEPLFELL DFQFSLIGWL HDKWRNMTVS GTGPREKSRP KTRTNQDVTV APVSVPQTSA  120
AAPVRCDSPA AAAPVRRDSP AAAPGGRDSP AATPVRRDAP AATPVRXDAP TETPVRRDTT  180
PVADDSATGL SDAIPAPVCN AMIFEALSAS TDPNGLDTSA IASYIEEAVY SHVDWSGKQR  240
IEVPQNFRRS LTGRLRRLVL QDKLEKIQNC YKVKTDSLSV SSDMLEESAR AAAHSIAEAE  300
YRSYLAAEQM KEAERINFMA ENTESMMQLA NEILEQCSEG EVLMVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.83800.0bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285388e-41FR828538.1 Rosa rugosa mRNA for putative MYB transcription factor (myb5 gene).
GenBankFR8285478e-41FR828547.1 Rosa rugosa mRNA for putative MYB transcription factor (myb14 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280906.10.0single myb histone 3-like
TrEMBLD9ZJ740.0D9ZJ74_MALDO; MYBR domain class transcription factor
STRINGXP_008337729.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-32MYB_related family protein