PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000223728
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 258aa    MW: 28780.8 Da    PI: 8.6436
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000223728genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000136991123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y C+ C+k F++   L  H++ H
  MDP0000223728 69 YACSSCDKAFPTTQALGGHQNAH 91
                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.5E-46595IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.31E-66695No hitNo description
PfamPF139121.5E-76994IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.056996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MLNFMFKSPS MFNNSKSSAH RSXIAXCXRS PSIAPCNPIT SDTSIPMMYP MSPILGSCLY  60
FQNRGSWKYA CSSCDKAFPT TQALGGHQNA HRKERNDLRV NEVARXAQEN RRFRPYVFQH  120
DPWRWAPPSI YNDFINKTKP RMRSYDFYHF LGMAGDCNPK WGAGLGXGSG SKRKKRGXDD  180
NDDAGADRDK KKGKYVGVID DLKVSMSNVT LSLATGSGDV DKSDSGLDWE DGECMYVVGG  240
DGEASTSKTE ELDLNLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203500.15e-62uncharacterized protein LOC18769515
TrEMBLA0A498IDJ20.0A0A498IDJ2_MALDO; Uncharacterized protein
STRINGXP_008387230.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1510933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.19e-08C2H2 family protein