PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000225209
Common NameSUP5b
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 237aa    MW: 26371.4 Da    PI: 8.6129
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000225209genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-054668123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H+++H
  MDP0000225209 46 YTCSFCKREFRSAQALGGHMNVH 68
                   9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-64372No hitNo description
SMARTSM003550.00384668IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-64669IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.244673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEKKNLVSNS LKDHAGIVTR TIRSSKTTYE EEDYNIDGFS WPPRLYTCSF CKREFRSAQA  60
LGGHMNVHRR DRARLKGSPP RDGQYTSTIL NLSLNKVPYP NPNFSSTSSP TSPSSLISPF  120
SSTLPSLISP SAPPSPTFLV PSSENMKWVV GDTIFNNPRN LEGSDLGTKV KKSEKSFCEV  180
GDRQRDGFIG EEXHGCIKTF KAADHPHHPI LRLDLEIGLP GDSNKENLDL ELRLGYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134168229superman protein
2l1o_A2e-134168229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4184710.0HQ418471.1 Malus x domestica transcriptional regulator superman (SUP5b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372793.21e-175transcriptional regulator SUPERMAN-like isoform X1
TrEMBLF6KKF81e-172F6KKF8_MALDO; Transcriptional regulator superman
STRINGXP_008372793.11e-174(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-22C2H2 family protein