PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000226894
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 141aa    MW: 16320.4 Da    PI: 5.665
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000226894genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-1623114199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffk+  p  +++ + l++pkkf++++g++   s  + ++ +sg +We+++  ++++g++++ kGW +F +   L  gD ++F+++g+s+f  +  +
  MDP0000226894  23 FFKII-PVETSRCRKLRIPKKFVNNYGEN--LSNPVHFKLPSGAEWEIEV--TRRGGEVWFDKGWPKFSEFYSLGYGDRLIFRYEGNSKF--HACI 111
                    55655.6666677889*******999966..7778***************..**********************************9999..9999 PP

                    E-S CS
             B3  97 frk 99 
                    f++
  MDP0000226894 112 FDR 114
                    987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-2415115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-2316115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-1721113No hitNo description
PROSITE profilePS5086313.05622115IPR003340B3 DNA binding domain
SMARTSM010199.0E-1523115IPR003340B3 DNA binding domain
PfamPF023621.4E-1323114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MASLIPEMDH RQRPSFSPTT PHFFKIIPVE TSRCRKLRIP KKFVNNYGEN LSNPVHFKLP  60
SGAEWEIEVT RRGGEVWFDK GWPKFSEFYS LGYGDRLIFR YEGNSKFHAC IFDRSATGIE  120
YPLPLPGMEE TDEDDDESVG V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505420.12e-77PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A498KNH57e-57A0A498KNH5_MALDO; Uncharacterized protein
STRINGXP_008354682.11e-101(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.17e-26B3 family protein