PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000227080
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 264aa    MW: 30674.1 Da    PI: 8.8436
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000227080genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-1623114199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffk+  p  +++ + l++pkkf++++g++   s  + ++ +sg +We+++  ++++g++++ kGW +F +   L  gD ++F+++g+s+f  +  +
  MDP0000227080  23 FFKII-PVETSRCRKLRIPKKFMNNYGEN--LSNPVHFKLPSGAEWEIEV--TRRGGKVWFDKGWPKFSEFYSLGYGDCLIFRYEGNSKF--HACI 111
                    55555.6666677789*******999966..7778***************..**********************************9999..9999 PP

                    E-S CS
             B3  97 frk 99 
                    f++
  MDP0000227080 112 FDR 114
                    987 PP
2B347.23.9e-15192264278
                    EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                    fkv +++++  ++ l+lp +fa+++  + +++   ++l+ ++gr+W+vk++y++k+ r++l   W  Fv++n+Lk gD
  MDP0000227080 192 FKVAMQPSYIFNQ-LILPSEFAKRYlTQHPTG--SVILRVPDGRTWNVKFKYENKRARFLLD--WLAFVEDNNLKIGD 264
                    4666666666665.***********7434444..6***************************..*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-2415115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2316115IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-1821113No hitNo description
PROSITE profilePS5086313.01422115IPR003340B3 DNA binding domain
PfamPF023621.8E-1323114IPR003340B3 DNA binding domain
SMARTSM010192.4E-1523115IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-18185264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-19185264IPR015300DNA-binding pseudobarrel domain
CDDcd100174.88E-19190264No hitNo description
PfamPF023625.9E-13192264IPR003340B3 DNA binding domain
SMARTSM010190.012192264IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041205264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MASLIPEMDH RQRPSFSPTT PHFFKIIPVE TSRCRKLRIP KKFMNNYGEN LSNPVHFKLP  60
SGAEWEIEVT RRGGKVWFDK GWPKFSEFYS LGYGDCLIFR YEGNSKFHAC IFDRSATEIE  120
YPLPLPGMEE TDEDDDESVE ILEDFPPCPR TRKKSPLPSP LPHKIKRIST SIGSTTLALQ  180
RAIDFKSENP HFKVAMQPSY IFNQLILPSE FAKRYLTQHP TGSVILRVPD GRTWNVKFKY  240
ENKRARFLLD WLAFVEDNNL KIGD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505420.11e-164PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A498KNH51e-121A0A498KNH5_MALDO; Uncharacterized protein
STRINGXP_008344299.11e-127(Malus domestica)
STRINGXP_008354683.11e-126(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.14e-24B3 family protein