PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000228713
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 550aa    MW: 60269.2 Da    PI: 7.84
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000228713genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.32.2e-1451100255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+ ++ r +Wv+eI d    gk+ r++lg++  ae+Aa+a++aa+++l g
  MDP0000228713  51 NYRGVWLRR-RTKWVSEISDK---GKKFRIWLGTYPKAEMAARAYDAAALALQG 100
                    69***8887.8******9993...3679**********************9987 PP
2AP249.88.5e-16268315255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVrw+k +g+W + I        + k+ +lg+f tae+Aa+a++aa+++l+g
  MDP0000228713 268 KYRGVRWRK-NGKWGSVISQ------KgKKLWLGSFPTAEMAARAYDAAALALKG 315
                    8********.8****99888......34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.62E-1450110No hitNo description
PfamPF008474.1E-1050100IPR001471AP2/ERF domain
SMARTSM003802.4E-2851114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2451109IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1751109IPR016177DNA-binding domain
PROSITE profilePS5103218.57151108IPR001471AP2/ERF domain
CDDcd000181.18E-13267325No hitNo description
SMARTSM003801.2E-26268329IPR001471AP2/ERF domain
PROSITE profilePS5103219.796268323IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-18268324IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-23268324IPR001471AP2/ERF domain
PfamPF008471.2E-10268315IPR001471AP2/ERF domain
PRINTSPR003673.7E-9269280IPR001471AP2/ERF domain
PRINTSPR003673.7E-9305325IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MTNSDSLTDK DTQNWTSERG QEPNISKEQS RNKKKKRQRN NDHSYGGKHP NYRGVWLRRR  60
TKWVSEISDK GKKFRIWLGT YPKAEMAARA YDAAALALQG ASASLNFPEL AKSLPKPESL  120
SPSSIQAAAA KAAAEAEAET AFGKKQILWE AVTEEAKASS IDQDPTSTIA STDCDAEKLV  180
SNAADPVDGS GCTCWKCLAL FGCLLEAFFE SFKISIEYIP INSEDCTSEK WREPNNAEEQ  240
SIKKKKKRQR TSTCTSDDHH CEGSNHQKYR GVRWRKNGKW GSVISQKGKK LWLGSFPTAE  300
MAARAYDAAA LALKGASADL NFPELAQALP QSDSPSPMDI QAAASASEEM QIVCEAVTEE  360
ADPRGKANLP MSLNSNNAQE STSTCASTAE GCAHQVKNLE GFRMSELLLS PYVVVKGLSK  420
TEAIVETVEL GLSSYCVPYV VLQPDNPYFC FFFAHRCILC KGGAENIDHM FLHCPLACRL  480
WYNLLQVARS PSSQPKSPVW KPPDEALIVI DNAAFAGVIS GVRGRRHIVL NLIVCGVQVA  540
VVIPNSNHGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1346323972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244249KKKRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302550.0cell culture
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324470.0GU732447.1 Malus x domestica AP2 domain class transcription factor (AP2D23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375741.10.0ethylene-responsive transcription factor ERF034-like
TrEMBLD5L1070.0D5L107_MALDO; AP2 domain class transcription factor
STRINGXP_008375741.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-14ERF family protein